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Embedding Python in C++: converting C++ vectors to numpy arrays, and plotting C++ vector contents using matplotlib

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Getting started with FFTW for computing the Discrete Fourier Transform

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grep: select non-matching lines

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Comment out block of code in bash shell script

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Unarchive and decompress .tar.bz2 and .tar.gz (Ubuntu 12.04)

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Texas A&M ENG-LIFE Workshop + Journal Club

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Journal club: the trend towards rapid "high-throughput" development

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OpenGL vs Direct3D: A history

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Journal club: One happy epigenetic family

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Using Emscripten to compile C++ to JavaScript on Windows 8

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Journal Club: Ugly dogs

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Journal club wonkiness

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Communicating science without undermining its complexities: different sizes of infinity

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Comment and annotate PDF in Ubuntu (12.10)

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Open terminal to current working directory from nautilus (Ubuntu 12.10)

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awk and GNU parallel: problems with quotes

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Journal club: Ontologies to hypotheses. UhLAWLNo

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Journal club: On data generation and analysis

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Modeling of convection

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Code golf

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Journal Club: Is statistical significance always biological significance?

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Journal club: neuroscience entomology

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Using awk: removing restriction site sequence from reads in fastq format

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Using awk: bitwise operations and string manipulation

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Journal Club: short ORFs and gene prediction

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Journal club: uORFs, eukaryotic "operon"?

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awk to transpose (super fast)

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Journal club: publishable units?

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Journal Club: Homologous recombination reporter lines

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Change MySQL data file directory (Ubuntu 12.10 64-bit)

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Journal club: sweet plots

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Journal Club: Nucleosome prediction

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Gamasutra Post: Overview of Motion Planning by Matthew Klingensmith

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Journal club: Specialist phenomena stems from differential concentrations

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Journal club - Green leafy volatiles

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Gamasutra and Ars Technica posts on WebGL and JavaScript performance

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Gamasutra post: Watch the intriguing '3-Sweep' 3D modeling technique in action

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Questions about models to analyze selective pressures

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Non-synonymous base substitutions

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Nature Jobs article: Two-body blessing by J.T. Neal

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Gamasutra post: Modeling by numbers by Jayelinda Suridge

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Postmortem: stacksToVCF

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Update Stacks installation

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Bioconductor is out-of-date: update R to version 3.0 in ubuntu

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mysql++ compile example Linux Ubuntu 32-bit (a.k.a. example of linking libraries, makefile, headers for C++)

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compile mysql++ from source on Linux Ubuntu 32-bit

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Queue command to run after existing command finishes

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awk print every other line (or every Nth line) in fasta file

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Create directory from R

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MySQL Purge Binary Logs (aka MySQL is taking up too much hard drive space)

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Location of MySQL database files on Linux Ubuntu

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Compile Genome Analysis Toolkit (GATK) from source

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VirtualLeaf tutorial: Fatal error message stepwise underflow in rkqs, with h=0.000000 and htry = 0.100000

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Gamasutra post by Timo Heinapurola: "What documentation?"

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Gamasutra blog post by Lee Perry: "One reason we see so many clones? Communication."

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Make bootable USB Linux Ubuntu

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Rename error in Linux VirtualLeaf tutorial: "Bareword "tutorial0" not allowed while "strict subs" in use at (eval 1) line 1."

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Nature News article: Quantum boost for artificial intelligence

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Beginnings with Git

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Advice from a systems software engineer

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compile errors in Linux VirtualLeaf installation

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Configuring an IGV Genome Server

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